hai,
I have solvated the protein using TIP3PBOX 8 2. When I try to save the topology and coordinates file ( .top and .rec) using the following command
>saveamberparm prot rec.top rec.crd
the files are not being saved with the following error message.
could not find angle parameter: N-CT-N
could not find angle parameter: N-CT-N
could not find angle parameter: N-CT-N
could not find angle parameter: N-CT-N
building proper torsion parmeters
1-4: ang 5-9 duplicates bond ('triangular' bond) or angle ('square' bond)
1-4: ang 2-7 duplicates bond ('triangular' bond) or angle ('square' bond)
building imroper torsion parameters
total 708 improper torsions applied
building H bond parameters
parameter file was not saved.
Can anyone help me to properly save the .top and .rec with out these messages.
Thanking you in advance.
reagrds,
swathi
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Received on Sun Jul 09 2006 - 06:07:05 PDT
