Hi!
You may tried to follow the descriptions in Tutorial 2 Section 5.
aa
>From: "Prabhakar. G." <prabha.ganesan.gmail.com>
>Reply-To: amber.scripps.edu
>To: amber.scripps.edu
>Subject: AMBER: fixing residues
>Date: Mon, 3 Jul 2006 17:46:46 +0530
>
>Dear Amber community,
>
>we are trying to do a md simulation of a particular loop of a protein,
>The protein has a total of 398 residues and the loop regions include
>residues 228-241.
>is there any option in amber to fix or freeze the conformation of other
>residues except that of loop
>so that they do not move during the simulation.
>
>prabhakar
>National Inst of Virology
>Pune
>India
_________________________________________________________________
No masks required! Use MSN Messenger to chat with friends and family.
http://go.msnserver.com/HK/25382.asp
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Jul 05 2006 - 06:07:15 PDT
