RE: AMBER: Amber: Segfault while running sander

From: Ross Walker <>
Date: Mon, 5 Jun 2006 11:31:35 -0700

> When running sander in as outlined in the DNA tutorial, I experience a
> segmentation fault. I could not find a solution in the

Unfortunately just saying the code crashed does not help at all. Can you
provide many more details. What version of Amber, what compiler, what
operating system, what hardware. What configure options did you use? Is this
in serial or parallel? Do the amber test cases run properly? Does amber work
for other calculations or does it always segfault? Did it write anything to
the output file before segfaulting? Was anything else printed to the screen?

Without this sort of information we cannot possibly work out what might be
going wrong.

All the best

|\oss Walker

| HPC Consultant and Staff Scientist |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- |
| | PGP Key available on request |

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Received on Wed Jun 07 2006 - 06:07:09 PDT
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