AMBER: Amber: Segfault while running sander

From: <>
Date: Mon, 05 Jun 2006 14:19:33 -0400

Dear All,
When running sander in as outlined in the DNA tutorial, I experience a
segmentation fault.  I could not find a solution in the archives and welcomeany
suggestions.  My commands are as follows:
sander -O - i -o polyAT_vac_init_min.out -c
polyAT_vac.inpcrd -p polyAT_vac.prmtop -r polyAT_vac_init_min.rst
I created the input file according to the tutorial which
looks like this:
polyA-polyT 10-mer: initial minimisation prior to MD
   imin   = 1,
   maxcyc = 500,
   ncyc   = 250,
   ntb    = 0,
   igb    = 0,
   cut    = 12
Thank you for your time and help.
Seth Lilavivat
Georgia Insititute of Technology
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Received on Wed Jun 07 2006 - 06:07:09 PDT
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