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Dear All,
When running sander in as outlined in the DNA tutorial, I experience a
segmentation fault. I could not find a solution in the archives and welcomeany
suggestions. My commands are as follows:
sander -O - i -polyAT_vac_init_min.in -o polyAT_vac_init_min.out -c
polyAT_vac.inpcrd -p polyAT_vac.prmtop -r polyAT_vac_init_min.rst
I created the polyAT_vac_init_min.in input file according to the tutorial which
looks like this:
polyA-polyT 10-mer: initial minimisation prior to MD
&cntrl
imin = 1,
maxcyc = 500,
ncyc = 250,
ntb = 0,
igb = 0,
cut = 12
/
Thank you for your time and help.
Seth Lilavivat
Georgia Insititute of Technology
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Received on Wed Jun 07 2006 - 06:07:09 PDT