On Mon, Oct 31, 2005, Mingfeng Yang wrote:
>
> Can somebody tell me what is the variable "tkbc2" in file
> $AMBERHOME/src/nmode/rmsf.f ?
This is kT/c**2 in cgs units (grams, in this case)
Here, k is Boltzmann's constant, T is 300K, and c is the speed of light.
(To go further, "avo" [Avogadro's constant] converts atomic mass units (what
Amber uses) to grams. "cmtoa" is centimeters to Angstroms, and the 2*pi
factor that converts Hz to angular frequency is added at the end.
....good luck...dac
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Received on Tue Nov 08 2005 - 17:53:00 PST
