RE: AMBER: installing amber7 on 64bit cluster

From: Ross Walker <ross.rosswalker.co.uk>
Date: Wed, 3 Aug 2005 23:39:22 -0700

Dear Murat

> I am trying to install amber7 to our linux-based cluster
> (64bit) but after I

You don't mention any details about your system, especially the make of cpu
so I will assume it is an Itanium machine.

> g77 -c -O3 -m486 -malign-double -ffast-math
> -fomit-frame-pointer -fno-globals
> -ff90 -funix-intrinsics-hide _new2oldparm_.f
> `-m486' is deprecated. Use `-march=i486' or `-mcpu=i486' instead.
> f771: CPU you selected does not support x86-64 instruction set
> f771: -malign-double makes no sense in the 64bit mode
> make[1]: *** [new2oldparm.o] Error 1
> make[1]: Leaving directory `/usr/local/amber7/src/lib'
> make: *** [install] Error 2

The MACHINE file you have used is for ix86 machines, it is not for Itanium
machines. Unfortunately itanium's were not around at the time amber7 was
released so you will have to do some hacking of the MACHINE file to get
things to work. I would start by removing all occurances of -m486 and
-malign-double. Then try doing make clean and make again.

Note, you may still get problems at the linking stage concerning certain
libraries. This is especially true if you libraries are all in /usr/lib64
instead of /usr/lib. You will have to check this out for yourself and edit
the library paths in the MACHINE file as necessary.

All the best
Ross

/\
\/
|\oss Walker

| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
| Tel: +1 858 784 8889 | EMail:- ross.rosswalker.co.uk |
| http://www.rosswalker.co.uk | PGP Key available on request |

Note: Electronic Mail is not secure, has no guarantee of delivery, may not
be ready every day, and should not be used for urgent or sensitive issues.


-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Thu Aug 04 2005 - 07:53:01 PDT
Custom Search