AMBER: cap and ptraj

From: Fabien CAILLIEZ <>
Date: Wed, 20 Jul 2005 00:14:50 +0200 (CEST)

Dear all,

I want to use ptraj from AMBER8 to analyse trajectories of simulations
with water capping.

When I load the topology file, there is this message :

Scanning Cap; this has not been debugged

Does it mean that ptraj is not able to treat files with capping
information ? Or that only some of the commands do not work with those
files (in this case, which of them)?

Thanks in advance for your answers,
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Received on Tue Jul 19 2005 - 23:53:00 PDT
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