What happens if you don't use MKL? I have come accross some problems with
the latest versions of MKL causing seg faults in Linux although I haven't
tracked down the problem yet. MKL6.1 still works fine but 7.1 segfaults, I
haven't tried 7.2 yet.
All the best
Ross
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|\oss Walker
| Department of Molecular Biology TPC15 |
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> -----Original Message-----
> From: owner-amber.scripps.edu
> [mailto:owner-amber.scripps.edu] On Behalf Of Dustin
> Sent: Tuesday, July 19, 2005 13:16
> To: amber.scripps.edu
> Cc: mooney-it.olympus.compbio.iupui.edu
> Subject: AMBER: Trouble with Amber8
>
> We are trying to install Amber on Red Hat Linux v3.0 WS (kernel 2.4),
> the machine has a Pentium 4 3.0Ghz, 1GB DDR ram. The program
> configures
> (./configure ifort) and makes (make serial) fine. When it
> comes time to
> test is when it fails.
>
> cd dmp; ./Run.dmp
>
> forrtl: severe (174): SIGSEGV, segmentation fault occurred
>
> Image PC Routine Line
> Source
>
> libc.so.6 00681039 Unknown Unknown
> Unknown
> Stack trace terminated
> abnormally.
> ./Run.dmp: Program
> error
> make: *** [test.sander.no_lmod] Error 1
>
> I get the same error when I us Red Hat Linux v4.0 WS (kernel 2.6) . I
> have recently tried Gentoo Linux and it worked fine. Is there some
> library that Red Hat needs.
>
> Additional Info:
> Intel Fortran: 9.0.021
> Math Kernel Library: 7.2.008
>
> Red Hat v3.0 WS
> GCC: 3.2.3 20030502 (Red Hat Linux 3.2.3-52)
> Kernel: 2.4.21-32.ELsmp
>
> Red Hat v4.0 WS
> GCC: 3.4.3 20050227
> Kernel: 2.6.9-11.ELsmp
>
> Gentoo 2005.0
> GCC: 3.3.5.20050130-r1
> Kernel: 2.6.12-gentoo-r4
> --------------------------------------------------------------
> ---------
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> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
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Received on Tue Jul 19 2005 - 21:53:00 PDT
