AMBER: rotating and repositioning molecules in xleap

From: Hwankyu Lee <>
Date: Sat, 21 May 2005 02:09:45 -0400

Dear Amber-users,

1) I'm connecting two molecules in xleap, and want to position those
molecules with specific configuration. I thought I can do that in edit
of xleap, but cannot find how to do this. Could you tell me how to
rotate and reposition molecules in xleap ? Is it possible in edit
(visual tool) of xleap?

2) Although I had .frcmod file by using parmchk, when I connected two
molecules, I got an error like "could not find angle parameter" or
"Could not find bond~~". In that case, how can I get reasonable angle,
bond or torsion parameters?

Thanks for your help in advance.


The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Mon May 23 2005 - 09:53:01 PDT
Custom Search