Hi Amber users,
I normally run sander with 16 nodes (dual processor in each) and I know the
speed of the run. This time I tried using 32 nodes, but the speed seems just
the same as 16 node runs. The system I simulate is completely the same as
before. Is there a limit for the number of nodes that AMBER can use? Or is
there another point I cannot figure out?
Thanks.
PS: I use amber7 and all nodes are functioning well.
Murat CETINKAYA
Biomolecular Materials Lab,
Dept. of Engr. Science and Mechanics,
The Pennsylvania State University,
University Park, PA 16802
office: (814) 863 9967
web: www.personal.psu.edu/muc176
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Thu May 12 2005 - 05:53:00 PDT
