Dear Li
> actually is N-acetyl-alanine-N'-methylamide, I can't load
> the correct
> structure into amber. I have used INSIGHT II to creat the pdb
See this tutorial,
http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_Six/index.htm
This explains a "quick and dirty" way of making NMA which is ACE+NME. You
could easily adapt this to include ACE+ALA+NME for alanine dipeptide.
I hope this helps.
All the best
Ross
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|\oss Walker
| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
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Received on Wed May 11 2005 - 18:53:00 PDT
