Re: AMBER: ipol=1 & use_pme= ??

From: David A. Case <case.scripps.edu>
Date: Mon, 2 May 2005 09:44:47 -0700

On Sat, Apr 30, 2005, Cenk Andac wrote:
>
> I was wondering if I should turn off pme (use_pme=0)
> when ipol is set to 1.

No.

>
> when use_pme=0, do I still need to use a non-bonded
> cut-off distance (cut) for explicit solvent
> simulations?

Yes. The variable "cut" is needed for all simulations. The default is
generally good for PME simulations, but is too short for non-PME simulations.

....dac
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Mon May 02 2005 - 17:53:01 PDT
Custom Search