Dear amber users,
I have two questions.
In the simulation of nucleic acids, to add explicit
solvent is it necessary to use a solvent box extending
9 or 8 Angstroms from the solute? Due to the
limitations of computational facitities I have used a
solventbox of 3 Angstroms.How this will affect the
results?
Second:
In the pdb data of an RNA there are two calcium atoms
at one end. How can I add the atomtype of these two
atoms?
Thanks in advance
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/\/\athew
Mathew K Varghese
Research Scholar
School of Pure and Applied Physics
M.G.University
Kottayam, Kerala
India
email mathew_kvarghese.yahoo.co.in
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Received on Wed Feb 23 2005 - 04:53:00 PST
