AMBER: Cyclic peptide

From: <>
Date: Tue, 15 Feb 2005 15:12:28 -0600

Dear AMBER-users,
I would like to carry out MD simulations for cyclic 25-residue peptide by
ABMER 7. We have built reasonable initial coordinates for of this peptide
by SYBYL (TRIPOS Inc.). How can I build the cyclic peptide and close the
termini by the LEaP means?
I would very appreciate if you can help.
Thank you very much for you consideration.

Alexander Rubinstein, Ph.D.
UNMC Eppley Cancer Center
Molecular Modeling Core Facility
University of Nebraska Medical Center
986805 Nebraska Medical Center
Omaha, Nebraska 68198-6805
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Received on Tue Feb 15 2005 - 21:53:00 PST
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