RE: AMBER:how to analyse trajectory files

From: Vineet Pande <>
Date: Mon, 14 Feb 2005 11:07:21 +0000

>i am new user to amber. i don't know how to analyse the molecular
>dynamics out put.i gave that file to ptraj.i could not able to
>understand what ptraj is can i see the variation in potential
>energy with there any other trajectory viewing software is
>there?please help me in this regard.

You may visit the AMBER page:
and reproduce some tutorials, though this will take some time but i am sure
it would be worth it & many fundamental questions you may have will become
automatically clear....regarding trajectory viewing software: CHIME or VMD.

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Received on Mon Feb 14 2005 - 11:53:00 PST
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