RE: AMBER: Linux Enterprise

From: Ross Walker <>
Date: Tue, 8 Feb 2005 11:59:43 -0800

You need to make sure you source the intel compiler setup files when you
E.g. if you use csh you need to add the following to your .cshrc file:
source /opt/intel_cc_80/bin/iccvars.csh
source /opt/intel_fc_80/bin/ifortvars.csh
This is described in detail in the manual for the Intel compilers and
should, if this a centrally managed machine, have been implemented by your
sys admin.
Alternatively you can compile amber8 as static by specifying the following
for the configure script:
../configure -p4 -static ifort
Then rebuild amber.
That way the executables won't need to go looking for shared libraries.
All the best

|\oss Walker

| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
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From: [] On Behalf Of
Beale, John
Sent: 08 February 2005 11:40
Subject: AMBER: Linux Enterprise

I am trying to run AMBER 8.0 on the Redhat Linux Enterprise platform. When I
try to run sander I get the following message:
sander: error while loading shared libraries: cannot open
shared object file: No such file or directory
AMBER 7.0 works just fine on the system.
Am I missing a file? How can I work through this?

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Received on Tue Feb 08 2005 - 20:53:01 PST
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