> mpirun -np 16 mm_pbsa.pl mm_pbsa.in >mm_pbsa.log < /dev/null
> the sander is paralleled,but the following nmode program is
> not paralleled.
> What's the problem?
Nmode is not a parallel program and so will only run on 1 cpu. Only sander
and pmemd are designed to run in parallel.
All the best
Ross
/\
\/
|\oss Walker
| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
| Tel:- +1 858 784 8889 | EMail:- ross.rosswalker.co.uk |
|
http://www.rosswalker.co.uk/ | PGP Key available on request |
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Received on Thu Oct 14 2004 - 17:53:00 PDT
