Dear Amber-users,
I'm trying to simulate dendrimer, which is huge macromolecule and has
repeated structures, in AMBER. Could you answer some questions ?
1) How can I make a coordinate file (pdb) of dendrimer for AMBER? Can
I use a specific tool to build coordinates of dendrimer?? If so, the
tool is compatible with AMBER package?
2) After making pdb file, how can I create topology file for the
dendrimer? I'm wondering how I get the parameters (partial charges,
e.g.) for the topology for the dendrimer.
Thanks for your help in advance.
best,
Hwankyu.
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Mon Sep 20 2004 - 04:53:00 PDT
