Hi Ozmer,
Use "bond" command in leap, then check your parm file by using "rdparm" to
make sure that particular bond is exist...
Regards,
Bimo
>
> Hi All,
>
> I wanna combine a sugar ligand to a Tyr residue from its O atom. I have
> prep
> file for the ligand from Glycam. I also modified Tyr by deleting the H of
> Tyr
> hydroxyl and formed a new prep file for Tyrosyl. Can anybody help me how
> to bond
> these covalently and form a new prep file for the ligand bound Tyrosyl
> group?
>
> Best,
>
> O.D.
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
--
Bimo Ario Tejo
Computational Biology Unit (R.140)
Enzyme and Microbial Technology Laboratory
Department of Biochemistry and Microbiology
Universiti Putra Malaysia
43400 Serdang
Malaysia
e-mail: bimo7.gmx.de
fax: +60-3-89430913
NEU: WLAN-Router für 0,- EUR* - auch für DSL-Wechsler!
GMX DSL = supergünstig & kabellos http://www.gmx.net/de/go/dsl
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Fri Aug 06 2004 - 06:53:00 PDT
