Re: AMBER: segmentation fault when running parmchk

From: Chutintorn Punwong <>
Date: Mon, 24 May 2004 17:34:11 -0500

Yes, I have this kind of problem too. I've run the antechamber test case
(tp.pdb) it worked fine.
My molecule is retinal analogue composed of 5 double bonds. Total number
of atoms is 31.

> When I run parmchk command to build frcmod file, it always give
> fault. I have tried gcc and pgcc to build parmchk program, but the
> are the same. The machine is P4 2.8GHz with SuSE8.2. I also built a copy
> with gcc on Athlon XP 1800+ with SuSE8.2. It works fine. Then I
copied it to
> P4 machine, it also failed. Has anyone ever meet this problem?

Does it also fail when running the antechamber test cases? (These test
cases invoke the parmchk program). Knowing that would help rule out any
problems with your input files.


The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Mon May 24 2004 - 23:53:00 PDT
Custom Search