AMBER: a problem about alanine scan of proline

From: luocheng <>
Date: Tue, 9 Mar 2004 17:0:27 +0800

Hello AMBER community,
I have run into problems with the MM-PBSA module when ALA-scanning a
Proline residues. When creating traj files, the program strips
CG,HGs,CD, and HDs from Prolines correctly but doesn't add the nitrogen
H atom resulting in a bad crd file.
could someone tell me how to deal with this problem?


Best regards,



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Received on Tue Mar 09 2004 - 09:53:00 PST
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