Re: AMBER: Pseudouridine force field parameters

From: Peter Gannett <pgannett.hsc.wvu.edu>
Date: Sun, 30 Nov 2003 10:56:28 -0500

David:

Thanks, found them.

Pete Gannett

>>> case.scripps.edu 11/29/03 7:48 PM >>>
On Sat, Nov 29, 2003, Peter Gannett wrote:
>
> Does anyone have a set of force field parameters for psuedouridine?
Or,
> can someone point me to where I might find them? I admit I have not
> searched long and hard but a cursory search did not turn up much
useful.

Go to http://amber.scripps.edu, then to the "contributed parameters"
link.
There you will find "modified bases that appear in tRNA-phe", which has
a "PSU" (pseudouridine) residue.

...good luck...dac

-- 
==================================================================
David A. Case                     |  e-mail:      case.scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
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Received on Wed Jan 14 2004 - 15:53:02 PST