AMBER: regarding trajectory input and output with ptraj or Carnal

From: Vlad Cojocaru <>
Date: Thu, 02 Oct 2003 14:37:19 +0200

Dear ambers,
   I have several dcd trajectories from NAMD. First question is: Does
Carnal support dcd input? If not I would like to transform them into
amber trajectories using ptraj, but I would like to do it in such a way
(like in Carnal) to select each 10th frame and to output the trajectory
after rms fitting to the first frame. I couldnt find in the amber manual
such an option for ptraj. Could somebody guide me just a bit into this?
Thank you very much

Vlad Cojocaru 
Max Planck Institute for Biophysical Chemistry 
Department: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1327 
home tel: ++49-551-9963204  
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Received on Thu Oct 02 2003 - 13:53:00 PDT
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