Hi amber,
I have one problems when I use tleap under AMBER6.
1. The bond command in tleap of AMBER6 seem different to bond command in
tleap of AMBER7. When I ran the bond command under AMBER7, it was
correct. if I ran the bond under AMBER6, the wrong message was
bond: Argument #1 is type String must be of type: [atom]
usage: bond <atom1> <atom2> [order]
The bond commands are:
loadAmberParams znbond.frcmod
lap hih.prepin
lap cyh.prepin
x=lp ca_nb_opt_mk_n1_nofix.pdb
bond x.2.ZN x.1.SG
bond x.2.ZN x.3.SG
bond x.2.ZN x.4.SG
Please help me, what is the correct bond command in AMBER6
--
Best regards,
Qiang Lu mailto:qiangl.uci.edu
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Received on Mon Aug 18 2003 - 18:53:01 PDT
