Re: AMBER: Fwd: Minimizing after solvation

From: Dr. Yong Duan <yduan.albert.chem.udel.edu>
Date: Mon, 21 Jul 2003 11:48:00 -0400 (EDT)

Angela,

Check the first two lines in the files. # of atoms is listed as the first
item. They should be the same. If they are not, chances are that you used
wrong prmtop file or wrong inpcrd file. This happens quite often for
relatively new users (sometimes even experienced users).

yong

>
> ATOMS DO NOT MATCH BETWEEN PARM AND MIN FILES
>
> THE PRMTOP AND INPCRD FILES WERE FROM THE TLEAP, WHICH RAN WITH NO ERRORS.
>
> THANK YOU FOR YOUR HELP AND SORRY FOR THE CONFUSION IN MY FIRST EMAIL.
>
> ANGELA
>
> ..good luck...dac
>
>
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Received on Mon Jul 21 2003 - 16:53:02 PDT
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