Re: any one has references to parallelization aspects of AMBER

From: Harikrishnan <>
Date: Tue, 29 Apr 2003 12:54:51 +0100 (BST)

Hi Satish,

The following references may be of use..I don't know
about any new papers..

J. Vincent and K.M. Merz, "A highly portable parallel
implementation of AMBER 4 using the Message Passing
Interface Standard", J. Comp. Chem. 16, 1420-1427

Crowley, M.F., Darden, T., Cheatham, T. Deerfield II,
D.W.. 1997. Adventures in Improving the Scaling and
Accuracy of a Parallel Molecular Dynamics Program. J.
Supercomputing 11:255-278.

best wishes

 --- Satish Kumar <> wrote: >
Hello All,
> please some one let me know where can i get
> journals,web links etc reg
> parallelization aspects of AMBER.
> i am studying scalabilty issues of AMBER code, and
> try to enhance it to run on
> huge clusters and SMPs.
> Thanx in advance
> Satish Kumar.Mummadi
> Bioinformatics,
> SECG,C-DAC, Pune.

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Received on Tue Apr 29 2003 - 13:53:02 PDT
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