On Thu, Apr 24, 2003, Khanh.Dao.iac.uib.no wrote:
>
>
>
> protonate -k -d PROTON_INFO < 1plc.nowat.pdb > 1plc.nowat.H.pdb >&
> protonate.out
This depends on what shell you are running. The above is for csh, I believe.
If you are using sh, bash, zsh, I think you can just replace ">&" with
"2>"; but check your shell documentation.
>
> protonate -k -d PROTON_INFO < 1plc.nowat.pdb > protonate.out
>
> I got the message "Unit 10 Error on OPEN: PROTON_INFO"
The default (with no -d switch) will find the above file. But if you want
to point to something explicitly, you need to include the complete path
to the file, (such as $AMBERHOME/dat/PROTON_INFO).
...good luck...dac
--
==================================================================
David A. Case | e-mail: case.scripps.edu
Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896
The Scripps Research Institute | phone: +1-858-784-9768
10550 N. Torrey Pines Rd. | home page:
La Jolla CA 92037 USA | http://www.scripps.edu/case
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Received on Thu Apr 24 2003 - 16:53:01 PDT
