When i look at the protonated pdb (.H) file.
I see that the output format is altered from that
of the standard pdb format in which the input
pdb file is specified.
i see that the 3rd column (atom name) is shifted
slightly to the left, when compared to the original
pdb file. Why is it so ? Can we avoid it ?
What happens to the last two columns of the input pdb?
(they are absent in the protonated output file).
Swaminathan
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S.Swaminathan
Technical Officer - Bioinformatics
Centre for DNA Fingerprinting & Diagnostics (CDFD)
ECIL Road, Nacharam,
Hyderabad - 500 076
Tel: 27151344,346 Extn. 1207/1208
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Received on Tue Apr 08 2003 - 06:53:01 PDT
