On Tue, Feb 18, 2003, SPEROLEEM_at_aol.com wrote:
> New to Amber7. Trying to use plastocyanin tutorial but am having difficulty.
>
>
> Ran tleap -f leaprc.ff94 (.ff94 not found so I copied leaprc.ff96 and
> called it leaprc.ff94)
leaprc.ff94 should be in $AMBERHOME/dat/leap/cmd, same place as leaprc.ff96.
They should be automatically found. You need to try to see why leaprc.ff96
works, but leaprc.ff94 doesn't. Make sure your $AMBERHOME variable is set.
> >source leap.in
>
> Among the error found were unknown keyword in parameter file.
Can you give the specific error message?
> mem.in and hicu files not found.
These files are in $AMBERHOME/examples/pcy. You need to copy them to your
working directry.
..good luck...dac
--
==================================================================
David A. Case | e-mail: case_at_scripps.edu
Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896
The Scripps Research Institute | phone: +1-858-784-9768
10550 N. Torrey Pines Rd. | home page:
La Jolla CA 92037 USA | http://www.scripps.edu/case
==================================================================
Received on Tue Feb 18 2003 - 14:16:34 PST
