Re: compatibility of amber with NAMD

From: Andreas Svrcek-Seiler <>
Date: Fri 14 Feb 2003 15:27:27 +0100 (CET)

> I was wondering if anyone has any expertise in trying to use amber
> generated files (topology especially) in NAMD. More specifically, is there
> a way to use the .prmtop file as input for NAMD (so not to transform it
> into a .psf file) if one also uses the amber force field in NAMD?'s quite straightforward, just follow the manual.
If you want rigid TIP3P waters,
the trick I described there really seems to work.
just be aware that it's an ungodly hack inside an ungodly hack :-)
good luck
Received on Fri Feb 14 2003 - 06:27:27 PST
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