Hi again,
In my last message I was saying that there is nothing related to nbflag
in the amber manual but it is wrong. I found information in the PME
section. It says that if nbflag =0 then the nonbonded list is updated
every nsnb steps. In my case nsnb =10 and also ntpr = 10 and ntb =2 (so
PME is turned on). Still I get the error message mentioned before?
lib-4324 : UNRECOVERABLE library error
The variable name 'NBFLAG' is unrecognized in namelist input.
Encountered during a namelist READ from unit 5
Fortran unit 5 is connected to a sequential formatted text file: "test.in"
IOT Trap
Anyone can help with a hint?
Thank you,
Ioana
From chernhoe_at_imcb.nus.edu.sg 07 Nov 2002 12:43:41 +0800
Message-id: <1036644223.2255.13.camel.tommy.ima.org.sg>
Date: 07 Nov 2002 12:43:41 +0800
From: chernhoe <chernhoe_at_imcb.nus.edu.sg>
To: AMBER list <amber.heimdal.compchem.ucsf.edu>
Subject: Re: amber on RH8
In-Reply-to: <20021106171258.GA1696.scripps.edu>
The following error message was observed when I tried to compile using
Machine.ifc on an AMD XP 1800+ machine using Red Hat 8 with updated
rpms.
gcc -g -DDEBUG -DMEMORY_DEBUG=0 -I.. -w -I/usr/X11R6/include
-Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE
-D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -DFUNCPROTO=15
-DNARROWPROTO -c -o unit.o unit.c
gcc -g -DDEBUG -DMEMORY_DEBUG=0 -I.. -w -I/usr/X11R6/include
-Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE
-D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -DFUNCPROTO=15
-DNARROWPROTO -c -o unitio.o unitio.c
unitio.c: In function `zbUnitIOIndexBondParameters':
unitio.c:1318: `sTemp1' undeclared (first use in this function)
unitio.c:1318: (Each undeclared identifier is reported only once
unitio.c:1318: for each function it appears in.)
unitio.c:1318: `sTemp2' undeclared (first use in this function)
make[3]: *** [unitio.o] Error 1
make[2]: *** [all] Error 2
make[1]: *** [World] Error 2
make: *** [install] Error 2
The following error message was observed when I used Machine.g77. Could
the default gcc 3.2 compiler be a problem?
gcc -g -DDEBUG -DMEMORY_DEBUG=0 -I.. -w -I/usr/X11R6/include
-Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE
-D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -DFUNCPROTO=15
-DNARROWPROTO -c -o unit.o unit.c
gcc -g -DDEBUG -DMEMORY_DEBUG=0 -I.. -w -I/usr/X11R6/include
-Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE
-D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -DFUNCPROTO=15
-DNARROWPROTO -c -o unitio.o unitio.c
unitio.c: In function `zbUnitIOIndexBondParameters':
unitio.c:1318: `sTemp1' undeclared (first use in this function)
unitio.c:1318: (Each undeclared identifier is reported only once
unitio.c:1318: for each function it appears in.)
unitio.c:1318: `sTemp2' undeclared (first use in this function)
make[3]: *** [unitio.o] Error 1
make[2]: *** [all] Error 2
make[1]: *** [World] Error 2
make: *** [install] Error 2
On Thu, 2002-11-07 at 01:12, David A. Case wrote:
> On Wed, Nov 06, 2002, chernhoe wrote:
>
> > I could not compile the X-windows version of leap on RH8. Does anyone
> > have a solution?
> >
>
> Can you give us some clue about what happened? Error message, other
> information?
>
> ..dac
>
> --
>
> ==================================================================
> David A. Case | e-mail: case_at_scripps.edu
> Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896
> The Scripps Research Institute | phone: +1-858-784-9768
> 10550 N. Torrey Pines Rd. | home page:
> La Jolla CA 92037 USA | http://www.scripps.edu/case
> ==================================================================
>
Received on Wed Nov 06 2002 - 19:45:02 PST
