Re: Solvent exposed surface area over a trajectory

From: Michael Ford <>
Date: Thu 17 Oct 2002 15:09:17 -0400

you may want to look at molsurf. You could take snapshots of the
trajectory using the gc option in mm_pbsa and then analyze the sasa
using molsurf.

Just a guess, we'll see how the big guns weigh in on this question.

Michael Ford

Rebecca Perlow wrote:
> Dear AMBER users,
> I am wondering if anyone knows of a program that will calculate the
> solvent exposed surface are of a residue or group of atoms over a
> trajectory. I know that the Insight program calculates the value for a
> static structure, but I wanted to get this value over an entire
> trajectory.
> Thanks in advance for any suggestions.
> -Rebecca Perlow
> Rebecca A. Perlow, Ph.D.
> Department of Biology
> New York University
> 100 Washington Square East
> New York, NY 10003
> Tel: (212)998-8228
> E-mail:
Received on Thu Oct 17 2002 - 12:09:17 PDT
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