Imaging & fitting in carnal

From: Sanjeev B.S. <>
Date: Thu 17 Oct 2002 16:31:55 +0530 (IST)

        I am using amber7. I need to image the solute so that it sits in
the center of the box and fit it to a reference structure. I tried ptraj
and it was not superposing correctly but not imaging water properly. (I
used the example of ptraj itself, and its mutants, given in manual).

        With carnal I could do imaging and superposing seperately, but
could not club them together. I am just interested to know *if* it can be
done using carnal. Thanks very much for any info in advance.

Received on Thu Oct 17 2002 - 04:01:55 PDT
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