a question about carnal

From: Vlad Cojocaru <Vlad.Cojocaru_at_mpi-bpc.mpg.de>
Date: Wed 14 Aug 2002 18:39:36 +0200

I have the following script:

   PARM p1 wild_type.top;
   PARM p2 com_ra14_ap.top;
   STREAM s1 p2 com_ra14_ap_0.pdb com_ra14_ap_o.pdb;
   STATIC ref p1 wild_type_0.pdb;
   TABLE t rms_mol.dat;
   COORD c fit_mol.pdb PDB;
   GROUP g1 (RES 1-138 , 140-142);
   RMS fit FIT g1 s1 ref;
   TABLE t fit;
   COORD c fit;

As you can see I am rms fitting two structures of one kind (p2) to
similar parts of other structure (p1). I would like to see how each of
p2 structure overlays on the p1 structure. In other words I would like
to see bothe p1 and p2 structures in one image. Would you be so kind to
telll me how could I output the coordinates in such a way? I also have
to say that the 2 structure differ only in 1 residue.
Thanks a lot,

Vlad Cojocaru 
Max Planck Institut for Biophysical Chemistry 
Deparment: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1389 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de  
Received on Wed Aug 14 2002 - 09:39:36 PDT
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