GB in Amber7

From: Jithesh <>
Date: Wed 14 Aug 2002 14:07:54 +0530


I'm planning to do simulation of a protein-DNA complex using the continuum solvent model. Which of the four methods available in Amber7 (igb) will be the best for this GB calculaton? Could anybody suggest the equilibration procedure for the system containing about 6000 atoms?

Thanks & regards
Jithesh P.V.
Bioinformatics Applications
C-DAC, Pune, India - 411007

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Received on Wed Aug 14 2002 - 01:37:54 PDT
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