I am trying to analyse helical paprameters for a 10-mer B-DNA (1bd1 pdb
code). I have the topology file created by xleap and several restart file
created through ptraj form AMBER trajectory file.
Below is my anal.in file
TITLE 'Helix parameter'
1 0 0 0 22 1
0 51.4828921 39.7147560 57.5269096 90.0
1 0 1 0 50 1
0.0 2.0 1.2 1.0
0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
HELIX
0 0 0 0 0
STOP
However it exits saying
THE DNA IS NOT A STANDARD TYPE ... NSTRAND = 0
I used AMBER95 FF.
Can someone susggest whats happening and possibly send me a coorect
anal.in file.
Thanks
Prabal
--
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Prabal K Maiti Email:maiti_at_wag.caltech.edu
Beckman Institute (139-74) pkmaiti_at_yahoo.com
California Institute of Technology Tel:626-395-8151 (O)
400 South Wilson Avenue :626-744-1363 (H)
Pasadena, CA 91125 Fax:626-585-0918
Home add: 110 S. Michigan Ave.
http://www.wag.caltech.edu/home/maiti Apt # 19, Pasadena, CA 91106
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Received on Mon May 20 2002 - 12:20:45 PDT
