Re: Amber7 nmode

From: David Case <>
Date: Wed 1 May 2002 10:55:07 -0700

On Wed, May 01, 2002, Sue Heavner wrote:

I then went to the test directory , ran make
test.nmode, and recieved the following messages:

> cd nmode; ./Run.ala-dipeptide
> NMODE: find normal modes
> diffing with vibs.out


> Then I went to the test/nmode directory but no files were created. When
> make test.<program-name> is run for other modules of amber output is found
> in the corresponding directories. Thanks in advance for any help on this
> subject.

All of the amber 7 tests *should* clean up after themselves when tests pass.
That is, if is the same as vibs.out, the latter is removed;
hence it will look like no files were created. You can look at the *.save
files, however, to see output examples.

I hope others will have suggestions about the mm_pbsa problem.

...good luck...dac

David A. Case                     |  e-mail:
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
La Jolla CA 92037  USA            |
Received on Wed May 01 2002 - 10:55:07 PDT
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