viewing md trajectory of a big system

From: Terreux Raphael <terreux_at_taloa.unice.fr>
Date: Mon 20 Dec 1999 18:12:39 -0800

Dear AMBER users,

i made some (rna + Mg2+ + water MD) simulation.
the system is about 25.000 atoms and 6.000 residues. To read the
trajectory i have try :
- recompile pdbgen with a greater MAXATOM and MAXRES and use interface
(based on the script pdbmany in /interface/example), the pdb generated
isn't valide
- use moilview ( too small for the system)

does anybody uses a software wich can directely read mdcrd of a large
system ?

regards.

raphael Terreux 


--
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TERREUX Raphael
LARTIC
Universite de Nice-Sophia Antipolis,
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Received on Mon Dec 20 1999 - 18:12:39 PST
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