Refining docking

From: Andrea <andrea_at_neriserv.chim.unisi.it>
Date: Fri 19 Nov 1999 12:21:13 +0100

I beg pardon if this is a trivial question, but I have to end this work
in a very short time and I'm not familiar with amber (v4.1) yet:
I want to improve the complex quality of a protein docked to an
antibody, and I want to run minimisation or md on this complex
mantaining the structure of each molecule fixed (at least the backbone),
but allowing one to move respect the other. How can I get this?

Thanks in advance, Andrea.


Dr. Andrea Bernini, Ph.D.
Dip. Biologia Molecolare
University of Siena, Italy
Received on Fri Nov 19 1999 - 03:21:13 PST
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