Amber Archive Nov 2025: by thread

[AMBER] Using Multiple Parameter-Topology Files in Cpptraj? Liao via AMBER (Sat Nov 01 2025 - 09:54:48 PDT)
- Re: [AMBER] Using Multiple Parameter-Topology Files in Cpptraj? Daniel Roe via AMBER (Sat Nov 01 2025 - 10:33:03 PDT)
[AMBER] Institute of Photonics and Electronics of the Czech Academy of Sciences is looking for Computational Molecular Modelling Research Assistant Marek Malý via AMBER (Sun Nov 02 2025 - 11:17:44 PST)
[AMBER] GAMESS-US PUNCH file Stefan Ivanov via AMBER (Tue Nov 04 2025 - 00:31:44 PST)
- Re: [AMBER] GAMESS-US PUNCH file James Kress via AMBER (Tue Nov 04 2025 - 16:24:07 PST)
[AMBER] Improve simulation performance for amber24 with an RTX 3080 Daniel Hall via AMBER (Tue Nov 04 2025 - 08:12:44 PST)
- Re: [AMBER] Improve simulation performance for amber24 with an RTX 3080 Carlos Simmerling via AMBER (Tue Nov 04 2025 - 08:33:48 PST)
  - Re: [AMBER] Improve simulation performance for amber24 with an RTX 3080 Adrian Roitberg via AMBER (Tue Nov 04 2025 - 08:45:18 PST)
[AMBER] Torsional Scan of a molecule in AMBER with GAFF Pradip Si via AMBER (Tue Nov 04 2025 - 15:22:32 PST)
Re: [AMBER] Vlimit error David A Case via AMBER (Thu Nov 06 2025 - 08:30:10 PST)
- Re: [AMBER] Vlimit error David A Case via AMBER (Fri Nov 07 2025 - 08:10:35 PST)
[AMBER] Trouvles with pmemd.cuda Дмитрий Громак via AMBER (Thu Nov 06 2025 - 09:13:32 PST)
Re: [AMBER] Problem compiling ambertools25/amber24 Greenberg, Jerry via AMBER (Thu Nov 06 2025 - 09:22:31 PST)
[AMBER] Issue with mdout file yumura.seigo967--- via AMBER (Thu Nov 06 2025 - 17:02:29 PST)
- Re: [AMBER] Issue with mdout file David A Case via AMBER (Fri Nov 07 2025 - 08:00:32 PST)
[AMBER] 3D Rism Ruchika Bhat via AMBER (Sat Nov 08 2025 - 02:03:36 PST)
[AMBER] Question About RMSD During Equilibration Wong, Matthew via AMBER (Sun Nov 09 2025 - 21:40:46 PST)
- Re: [AMBER] Question About RMSD During Equilibration David A Case via AMBER (Mon Nov 10 2025 - 07:20:53 PST)
- Re: [AMBER] Question About RMSD During Equilibration Carlos Simmerling via AMBER (Mon Nov 10 2025 - 07:48:51 PST)
[AMBER] Compiling AmberTools for linux/arm64/v8 and NVIDIA GH200 Grace Hopper Superchips Emlyn Clay via AMBER (Wed Nov 12 2025 - 10:08:27 PST)
- Re: [AMBER] Compiling AmberTools for linux/arm64/v8 and NVIDIA GH200 Grace Hopper Superchips Patricio Barletta via AMBER (Wed Nov 12 2025 - 12:07:23 PST)
  - Re: [AMBER] Compiling AmberTools for linux/arm64/v8 and NVIDIA GH200 Grace Hopper Superchips Emlyn Clay via AMBER (Wed Nov 12 2025 - 13:26:49 PST)
[AMBER] XTB and DFTB+ into AMBER Yasser Almeida via AMBER (Thu Nov 13 2025 - 03:34:03 PST)
- Re: [AMBER] XTB and DFTB+ into AMBER Timothy Giese via AMBER (Thu Nov 13 2025 - 08:37:55 PST)
[AMBER] System doesn't heat up to target temperature during relaxation Antti Salo via AMBER (Thu Nov 13 2025 - 04:19:21 PST)
- Re: [AMBER] System doesn't heat up to target temperature during relaxation Carlos Simmerling via AMBER (Thu Nov 13 2025 - 04:30:32 PST)
- Re: [AMBER] System doesn't heat up to target temperature during relaxation David A Case via AMBER (Thu Nov 13 2025 - 10:22:06 PST)
[AMBER] Trying to Setup PMEMD Amber24 Eng, Kevin Neil via AMBER (Fri Nov 14 2025 - 13:47:04 PST)
- Re: [AMBER] Trying to Setup PMEMD Amber24 David A Case via AMBER (Fri Nov 14 2025 - 15:53:04 PST)
- Re: [AMBER] Trying to Setup PMEMD Amber24 David A Case via AMBER (Sat Nov 15 2025 - 07:14:37 PST)
[AMBER] Issue with NPT Step While Running Equilibration Using pmemd.MPI Surabhi Singh 24933024 via AMBER (Fri Nov 14 2025 - 22:21:26 PST)
- Re: [AMBER] Issue with NPT Step While Running Equilibration Using pmemd.MPI Carlos Simmerling via AMBER (Sat Nov 15 2025 - 02:55:07 PST)
- Re: [AMBER] Issue with NPT Step While Running Equilibration Using pmemd.MPI David A Case via AMBER (Sat Nov 15 2025 - 07:17:19 PST)
[AMBER] Upgrading to Amber 24 from Amber 18 maya nair via AMBER (Sat Nov 15 2025 - 04:29:40 PST)
Re: [AMBER] Bad atom type Priyasha Majee via AMBER (Thu Nov 20 2025 - 21:17:00 PST)
- Re: [AMBER] Bad atom type David A Case via AMBER (Mon Nov 24 2025 - 07:17:21 PST)
[AMBER] Fwd: Re: Fwd: Re: [Ticket#0289708] Error in plumed Priyasha Majee via AMBER (Tue Nov 25 2025 - 02:48:01 PST)
- Re: [AMBER] Fwd: Re: Fwd: Re: [Ticket#0289708] Error in plumed Priyasha Majee via AMBER (Tue Nov 25 2025 - 02:54:54 PST)
[AMBER] constant pH and AMD integration Anders Frederiksen via AMBER (Wed Nov 26 2025 - 04:05:01 PST)

Amber Archive Nov 2025 by thread