Amber Archive Oct 2025: by thread

[AMBER] Looking at gaff2 FyD via AMBER (Wed Oct 01 2025 - 00:36:03 PDT)
[AMBER] Solvate with SPC/Fw water Terai, Kiriko via AMBER (Thu Oct 02 2025 - 09:02:15 PDT)
- Re: [AMBER] Solvate with SPC/Fw water Masoud Keramati via AMBER (Thu Oct 02 2025 - 09:12:23 PDT)
  - Re: [AMBER] Solvate with SPC/Fw water Terai, Kiriko via AMBER (Thu Oct 02 2025 - 09:16:28 PDT)
    - Re: [AMBER] Solvate with SPC/Fw water Masoud Keramati via AMBER (Thu Oct 02 2025 - 09:32:50 PDT)
    - Re: [AMBER] Solvate with SPC/Fw water Terai, Kiriko via AMBER (Thu Oct 02 2025 - 09:36:49 PDT)
    - Re: [AMBER] Solvate with SPC/Fw water Terai, Kiriko via AMBER (Thu Oct 02 2025 - 12:55:53 PDT)
[AMBER] Water box breaking / holes forming during minimization in AMBER Patil Pranita Uttamrao via AMBER (Mon Oct 06 2025 - 03:40:49 PDT)
- Re: [AMBER] Water box breaking / holes forming during minimization in AMBER Arun Srikanth via AMBER (Mon Oct 06 2025 - 04:29:39 PDT)
- Re: [AMBER] Water box breaking / holes forming during minimization in AMBER Daniel Roe via AMBER (Tue Oct 07 2025 - 07:56:49 PDT)
- Re: [AMBER] Water box breaking / holes forming during minimization in AMBER David A Case via AMBER (Tue Oct 07 2025 - 18:40:03 PDT)
Re: [AMBER] about "...gti_controlVariable.i for GaMD-PPI ..." Christian Seitz via AMBER (Mon Oct 06 2025 - 15:41:11 PDT)
- Re: [AMBER] about "...gti_controlVariable.i for GaMD-PPI ..." Patricio Barletta via AMBER (Mon Oct 06 2025 - 18:33:13 PDT)
- Re: [AMBER] about "...gti_controlVariable.i for GaMD-PPI ..." Christian Seitz via AMBER (Mon Oct 20 2025 - 15:22:08 PDT)
[AMBER] UN-SUBSCRIBE Abhisek Mondal via AMBER (Mon Oct 06 2025 - 16:08:54 PDT)
[AMBER] QM/MM Reaction help Anthony Dominic Iii via AMBER (Tue Oct 07 2025 - 12:55:28 PDT)
- Re: [AMBER] QM/MM Reaction help Goetz, Andreas via AMBER (Tue Oct 07 2025 - 14:07:33 PDT)
  - Re: [AMBER] QM/MM Reaction help Anthony Dominic Iii via AMBER (Mon Oct 13 2025 - 08:00:35 PDT)
[AMBER] System blow-up during structure relaxation Antti Salo via AMBER (Wed Oct 08 2025 - 01:13:09 PDT)
- Re: [AMBER] System blow-up during structure relaxation Carlos Simmerling via AMBER (Fri Oct 10 2025 - 08:28:19 PDT)
- Re: [AMBER] System blow-up during structure relaxation Adrian Roitberg via AMBER (Fri Oct 10 2025 - 08:45:44 PDT)
[AMBER] Vlimit error Surabhi Singh 24933024 via AMBER (Fri Oct 10 2025 - 00:15:53 PDT)
- Re: [AMBER] Vlimit error Téletchéa Stéphane via AMBER (Fri Oct 10 2025 - 01:32:13 PDT)
  - Re: [AMBER] Vlimit error Daniel Roe via AMBER (Fri Oct 10 2025 - 09:48:25 PDT)
Re: [AMBER] Missing Angle Parameter Issue Carlos Simmerling via AMBER (Fri Oct 10 2025 - 08:30:26 PDT)
[AMBER] Reading guess file provided manually for Amber-Gaussian QMMM calculations Ananya Nayak via AMBER (Mon Oct 13 2025 - 23:34:00 PDT)
- Re: [AMBER] Reading guess file provided manually for Amber-Gaussian QMMM calculations PUJAN AJMERA via AMBER (Mon Oct 13 2025 - 23:45:38 PDT)
  - Re: [AMBER] Reading guess file provided manually for Amber-Gaussian QMMM calculations Ananya Nayak via AMBER (Tue Oct 14 2025 - 00:15:23 PDT)
    - Re: [AMBER] Reading guess file provided manually for Amber-Gaussian QMMM calculations Goetz, Andreas via AMBER (Tue Oct 14 2025 - 19:06:06 PDT)
[AMBER] Problem with cpptraj Osman, Roman via AMBER (Thu Oct 16 2025 - 17:43:11 PDT)
- Re: [AMBER] Problem with cpptraj Daniel Roe via AMBER (Thu Oct 16 2025 - 18:16:12 PDT)
[AMBER] Isddm.py Charles-Alexandre Mattelaer via AMBER (Sun Oct 19 2025 - 09:16:27 PDT)
[AMBER] illegal memory access Tomás Benjamín Cáceres Madariaga via AMBER (Sun Oct 19 2025 - 10:06:14 PDT)
- Re: [AMBER] illegal memory access David A Case via AMBER (Fri Oct 24 2025 - 20:40:04 PDT)
Re: [AMBER] MBAR input keywords not recognized in sander.MPI (Amber24) Timothy Giese via AMBER (Mon Oct 20 2025 - 07:34:28 PDT)
- Re: [AMBER] MBAR input keywords not recognized in sander.MPI (Amber24) Dulal Mondal via AMBER (Mon Oct 20 2025 - 08:28:15 PDT)
[AMBER] Problem compiling ambertools25/amber24 Greenberg, Jerry via AMBER (Wed Oct 22 2025 - 15:28:40 PDT)
- Re: [AMBER] Problem compiling ambertools25/amber24 David A Case via AMBER (Fri Oct 24 2025 - 20:52:24 PDT)
[AMBER] Assistance with SMD Error Related to Hydrogen Bond Collective Variables Abhisek Jana via AMBER (Sun Oct 26 2025 - 22:33:01 PDT)
[AMBER] Error in AMBER24 compilation with xTB Kriti Shukla via AMBER (Mon Oct 27 2025 - 05:09:12 PDT)

Amber Archive Oct 2025 by thread