[AMBER] force field combination for a protein-RNA complex

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From: Sruthi Sudhakar via AMBER <amber.ambermd.org>
Date: Fri, 28 Mar 2025 15:19:20 -0400

Dear all,

I want to ask what is the best recommended force field combination for
protein-RNA complexes. I am particularly interested in the water model to
be used in this regard. We have been using ff14SB, OL3 and TIP3P for our
previous simulations. But I have read about the ff19SB and it being more
accurate with OPC. Kindly advise regarding the same.

Regards,
Sruthi
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Received on Fri Mar 28 2025 - 12:30:02 PDT