Hi,
If you want to use the existing conda installation in your system, you can add a line to the run_cmake file as -DUSE_CONDA_LIBS=TRUE. Please make sure setting the -DDOWNLOAD_MINICONDA flag to FALSE.
Best,
Satyajit
________________________________
From: David A Case via AMBER <amber.ambermd.org>
Sent: Friday, March 21, 2025 12:22:14 pm
To: Latorraca, Naomi R. <nl2960.cumc.columbia.edu>; AMBER Mailing List <amber.ambermd.org>
Subject: Re: [AMBER] compiling Amber24 on Rocky9 HPC cluster
On Thu, Mar 20, 2025, Latorraca, Naomi R. via AMBER wrote:
>
>I am attempting to compile Amber24 on our Rock9.1 HPC cluster, but I'm
>running into an error when cmake attempts to download and build local
>miniconda:
>
>I run module load cmake to load the system's cmake (3.24.2). When I run the
>./run_cmake command (in step 4 of the installation instructions), cmake
>hangs indefinitely when it attempts to download and build a local miniconda
>at the "unpacking payload" step.
I don't have any real solution, but you might try again (internet download
failures can be temporary.) Trying again on a different machine, if that is
possible, might also provide some information.
Some people on the list might have detailed notes about how to use an
existing python (so that you could set DOWNLOAD_MINICONDA to FALSE). It's a
matter of making sure that your python has all the required imports.
...hope this helps...although I'm grasping at straws.....dac
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Received on Fri Mar 21 2025 - 10:00:03 PDT
