[AMBER] modified amino acid residue error while using antechamber

From: fateme haghighi via AMBER <amber.ambermd.org>
Date: Thu, 20 Mar 2025 16:23:03 +0000

Hi,
I am following *tutorial B5 ("Simulating the Green Fluorescent **Protein")to build parameters for phosphorylated threonine (TPO).
I used following code:
antechamber -fi ccif -i TPO.cif -bk TPO -fo ac -o TPO.ac -c bcc -at amber

 but I got the following error.*

amber24_src/AmberTools/src/antechamber/mmcif.c:65: rmmcif: Assertion `col6 >= 0' failed.
/home/amber24/bin/antechamber: line 9: 46194 Aborted (core dumped) "$AMBERHOME/bin/wrapped_progs/antechamber" "$."

I could not attach the cif file. Please tell me how to resolve the error.

Thanks in advance.





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Received on Thu Mar 20 2025 - 09:30:02 PDT
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