Amber Archive Feb 2025: by thread

[AMBER] Incorporating constant pressure in input file for 3drsim calcualtion angad sharma via AMBER (Sun Feb 02 2025 - 12:13:37 PST)
[AMBER] Scaling parameters in igb=8 Tej Tarun Sharma 2310225 via AMBER (Sun Feb 02 2025 - 21:47:57 PST)
- Re: [AMBER] Scaling parameters in igb=8 David A Case via AMBER (Mon Feb 03 2025 - 10:19:36 PST)
[AMBER] The problem with reading topology file in LES with restraints simulating Кунина, Елизавета Игоревна via AMBER (Mon Feb 03 2025 - 04:35:26 PST)
- Re: [AMBER] The problem with reading topology file in LES with restraints simulating David A Case via AMBER (Mon Feb 03 2025 - 10:22:58 PST)
Re: [AMBER] Generating GAFF for Conformational Polymorphs Pradip Si via AMBER (Mon Feb 03 2025 - 10:54:53 PST)
[AMBER] Issue of temperature fluctuation in RAMD on GPU & possible solution as0200264 via AMBER (Mon Feb 03 2025 - 22:39:50 PST)
[AMBER] Conversion factor in LJ parameters for RISM angad sharma via AMBER (Mon Feb 03 2025 - 23:37:19 PST)
Re: [AMBER] Amber metal ions protein multiple chains Iglika Lessigiarska via AMBER (Tue Feb 04 2025 - 04:16:09 PST)
[AMBER] Uranyl Simulation Discrepancy Between CPU and GPU KLEIN Jordan via AMBER (Tue Feb 04 2025 - 04:42:03 PST)
- Re: [AMBER] Uranyl Simulation Discrepancy Between CPU and GPU David A Case via AMBER (Tue Feb 11 2025 - 07:13:16 PST)
[AMBER] ReaxFF/AMBER inconsistency Dezsö Babai via AMBER (Wed Feb 05 2025 - 09:23:45 PST)
[AMBER] Conversion factor in LJ parameters for RISM angad sharma via AMBER (Thu Feb 06 2025 - 09:15:55 PST)
[AMBER] addles.in for LES Кунина, Елизавета Игоревна via AMBER (Thu Feb 06 2025 - 23:26:27 PST)
- Re: [AMBER] addles.in for LES David A Case via AMBER (Thu Feb 13 2025 - 06:47:04 PST)
[AMBER] HPO4- and PO4- Gabriel Ernesto Jara via AMBER (Fri Feb 07 2025 - 08:56:44 PST)
- Re: [AMBER] HPO4- and PO4- David A Case via AMBER (Mon Feb 10 2025 - 07:16:03 PST)
- Re: [AMBER] HPO4- and PO4- Gabriel Ernesto Jara via AMBER (Mon Feb 10 2025 - 10:24:43 PST)
  - Re: [AMBER] HPO4- and PO4- Jones De Andrade via AMBER (Mon Feb 10 2025 - 10:39:19 PST)
    - Re: [AMBER] HPO4- and PO4- Gabriel Ernesto Jara via AMBER (Mon Feb 17 2025 - 05:42:59 PST)
[AMBER] Metal nano cluster simulation Rinsha Chk via AMBER (Sun Feb 09 2025 - 22:49:22 PST)
[AMBER] M3 Mac struggling to install Amber Luke Allfree via AMBER (Mon Feb 10 2025 - 01:18:33 PST)
- Re: [AMBER] M3 Mac struggling to install Amber David A Case via AMBER (Mon Feb 10 2025 - 07:30:52 PST)
[AMBER] Issue with Water Box Breaking in CUDA MD Simulations TUSHAR GUPTA via AMBER (Mon Feb 10 2025 - 04:46:07 PST)
- Re: [AMBER] Issue with Water Box Breaking in CUDA MD Simulations David A Case via AMBER (Mon Feb 10 2025 - 07:37:20 PST)
- Re: [AMBER] Issue with Water Box Breaking in CUDA MD Simulations TUSHAR GUPTA via AMBER (Sun Feb 16 2025 - 21:48:15 PST)
  - Re: [AMBER] Issue with Water Box Breaking in CUDA MD Simulations David A Case via AMBER (Mon Feb 17 2025 - 19:43:47 PST)
  - Re: [AMBER] Issue with Water Box Breaking in CUDA MD Simulations Dr. Anselm Horn via AMBER (Tue Feb 18 2025 - 03:00:34 PST)
Re: [AMBER-Developers] [AMBER] M3 Mac struggling to install Amber David A Case via AMBER-Developers (Mon Feb 10 2025 - 12:06:43 PST)
[AMBER] Clarification on Conversion of Lennard-Jones Parameters for RISM Calculations Pooja Pooja via AMBER (Mon Feb 10 2025 - 22:51:52 PST)
[AMBER] RNA aptamer setup Debarati DasGupta via AMBER (Tue Feb 11 2025 - 09:11:45 PST)
Re: [AMBER] Position restraints in NPT May Kevin via AMBER (Tue Feb 11 2025 - 19:41:39 PST)
[AMBER] Installation error on Mac M2 INDAH LANGITASARI via AMBER (Wed Feb 12 2025 - 01:33:48 PST)
[AMBER] Installation error on Mac M2 INDAH LANGITASARI via AMBER (Wed Feb 12 2025 - 01:43:59 PST)
- Re: [AMBER] Installation error on Mac M2 David A Case via AMBER (Wed Feb 12 2025 - 06:55:05 PST)
[AMBER] Installation error on Mac M2 INDAH LANGITASARI via AMBER (Wed Feb 12 2025 - 01:48:43 PST)
[AMBER] Initial RTX5080 Numbers Ross Walker via AMBER (Wed Feb 12 2025 - 13:01:21 PST)
[AMBER] Extracting bias potential information from AMBER metadynamics Sonti Siddharth via AMBER (Thu Feb 13 2025 - 11:50:13 PST)
[AMBER] Question about Wall Restraints Performance in ABMD Simulations 孟令屾 via AMBER (Fri Feb 14 2025 - 02:31:27 PST)
- Re: [AMBER] Question about Wall Restraints Performance in ABMD Simulations Feng Pan via AMBER (Tue Feb 18 2025 - 10:05:06 PST)
[AMBER] Issues with 12-6-4 Nell Karpinski via AMBER (Fri Feb 14 2025 - 11:29:03 PST)
- Re: [AMBER] Issues with 12-6-4 Li, Zhen via AMBER (Fri Feb 14 2025 - 11:35:56 PST)
[AMBER] Calculating Viscosity. MD FAHIM NEWAZ via AMBER (Mon Feb 17 2025 - 01:14:47 PST)
Re: [AMBER] Help with MMPBSA.PY Pairwise Decomposition Results Gabriel Ernesto Jara via AMBER (Mon Feb 17 2025 - 05:27:45 PST)
- Re: [AMBER] Help with MMPBSA.PY Pairwise Decomposition Results Ray Luo via AMBER (Tue Feb 18 2025 - 10:33:16 PST)
[AMBER] Implementig AMBER 24 VERONICA MARTIN HERNANDEZ via AMBER (Mon Feb 17 2025 - 09:51:46 PST)
- Re: [AMBER] Implementig AMBER 24 David A Case via AMBER (Mon Feb 17 2025 - 19:48:18 PST)
  - Re: [AMBER] Implementig AMBER 24 VERONICA MARTIN HERNANDEZ via AMBER (Tue Feb 18 2025 - 04:24:28 PST)
[AMBER] Regarding Dihedral Restraints in MD simulation Devid Sahu via AMBER (Mon Feb 17 2025 - 22:03:51 PST)
- Re: [AMBER] Regarding Dihedral Restraints in MD simulation Carlos Simmerling via AMBER (Tue Feb 18 2025 - 09:15:17 PST)
- Re: [AMBER] Regarding Dihedral Restraints in MD simulation Solen Ekesan via AMBER (Tue Feb 18 2025 - 13:34:40 PST)
- Re: [AMBER] Regarding Dihedral Restraints in MD simulation Carlos Simmerling via AMBER (Wed Feb 19 2025 - 04:14:46 PST)
[AMBER] Changing the number of ntwx Ibrahim Said via AMBER (Wed Feb 19 2025 - 00:30:49 PST)

Amber Archive Feb 2025 by thread