Re: [AMBER] prmtop and inpcrd file generation error:

From: Timothy Giese via AMBER <amber.ambermd.org>
Date: Thu, 9 Jan 2025 20:52:50 +0000

My guess is that you produced new parameter and restart files without error and you don't like them because the lattice vectors don't match your original system. If my guess is correct, then you can use the ChBox utility program to change the lattice vectors to match your original system. Note that you'll need to reequilibrate the system at constant pressure because different water models produce different system densities.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jan 09 2025 - 13:00:02 PST
Custom Search