On Sat, Jan 04, 2025, Benjamin Shugaev via AMBER wrote:
>When I
>try to run pdb4amber I get an error that indicates that the naming of the
>lipids isn't consistent with the naming within Amber, so it crushes,
I think we need more information here. You could try to skip the pdb4amber
step, since tleap may give more informative error messages about exactly
what naming discrepancies you have. If you can't grok the tleap output,
please send both the exact tleap commands you used, and the input pdb
file(s) that are being loaded.
I'm not sure how GaussView is being used, or what your input PDB files look
like, so it's hard to offer any detailed advice.
....dac
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Received on Sat Jan 04 2025 - 21:00:02 PST
