Amber Archive Jan 2025 by thread
- [AMBER] Dimension problem for a huge rod-like system PD Dr. Anselm Horn via AMBER (Wed Jan 01 2025 - 02:34:18 PST)
- Re: [AMBER] Regarding polarizable continuum solvation model: David A Case via AMBER (Wed Jan 01 2025 - 10:09:33 PST)
- [AMBER] process_mdout.perl doesn't extract Density data LI An-Bang via AMBER (Wed Jan 01 2025 - 18:21:30 PST)
- [AMBER] nastruct Jing Qu via AMBER (Thu Jan 02 2025 - 04:30:00 PST)
- [AMBER] Error installing amber on and GPUs Wong, Sergio E. via AMBER (Thu Jan 02 2025 - 05:06:52 PST)
- Re: [AMBER] Regarding QM-MM_MD setup calculation: Goetz, Andreas via AMBER (Thu Jan 02 2025 - 14:04:31 PST)
- [AMBER] Regarding QMMM simulation run error: Kankana Bhattacharjee via AMBER (Fri Jan 03 2025 - 10:52:53 PST)
- Re: [AMBER] CPPTRAJ grid output units Daniel Roe via AMBER (Sat Jan 04 2025 - 09:46:27 PST)
- [AMBER] tleap error: ligand atom does not have a type Zeyu Lin via AMBER (Sat Jan 04 2025 - 09:57:32 PST)
- [AMBER] Single Point Energy calculation using Force Fields Benjamin Shugaev via AMBER (Sat Jan 04 2025 - 10:46:55 PST)
- [AMBER] aMD run Dulal Mondal via AMBER (Sun Jan 05 2025 - 04:39:03 PST)
- [AMBER] Regarding QM-MM error: Kankana Bhattacharjee via AMBER (Sun Jan 05 2025 - 23:13:39 PST)
- [AMBER] Unphysical temperature spikes Kiriko Terai via AMBER (Mon Jan 06 2025 - 09:13:17 PST)
- [AMBER] Use OPM to add membrane Zeyu Lin via AMBER (Mon Jan 06 2025 - 19:08:46 PST)
- Re: [AMBER] Question about vectors Jing Qu via AMBER (Mon Jan 06 2025 - 19:57:37 PST)
- [AMBER] Regarding the use of the opc3pol water model and the QM-MM calculation error: Kankana Bhattacharjee via AMBER (Mon Jan 06 2025 - 23:43:08 PST)
- [AMBER] Issue with generating output files Munazzah Fatima Ansari via AMBER (Tue Jan 07 2025 - 23:35:53 PST)
- [AMBER] Problem in stapled peptides Airy Sanjeev via AMBER (Wed Jan 08 2025 - 06:03:14 PST)
- [AMBER] A monomer move out the simulation box Ibrahim Said via AMBER (Thu Jan 09 2025 - 09:30:36 PST)
- [AMBER] prmtop and inpcrd file generation error: Kankana Bhattacharjee via AMBER (Thu Jan 09 2025 - 10:46:14 PST)
- [AMBER] [amber-owner.ambermd.org: Re: Problem in stapled peptides] David A Case via AMBER (Thu Jan 09 2025 - 21:51:16 PST)
- [AMBER] [amber-owner.ambermd.org: Re: prmtop and inpcrd file generation error:] David A Case via AMBER (Thu Jan 09 2025 - 21:50:54 PST)
- [AMBER] Error calculation halted in pmemd.cuda Bhattacharjee, Sinjini via AMBER (Fri Jan 10 2025 - 03:04:56 PST)
- [AMBER] sander.quick.cuda error: Kankana Bhattacharjee via AMBER (Fri Jan 10 2025 - 09:16:40 PST)
- [AMBER] QM steered md question Ramdhan,Peter A via AMBER (Sat Jan 11 2025 - 14:55:16 PST)
- [AMBER] Amber metal ions protein multiple chains Iglika Lessigiarska via AMBER (Mon Jan 13 2025 - 03:19:59 PST)
- [AMBER] problem in installing Amber24 TUSHAR GUPTA via AMBER (Mon Jan 13 2025 - 05:13:06 PST)
- [AMBER] Best method to calculate vdW energies between residue side chains Intravaia, Lauren E via AMBER (Mon Jan 13 2025 - 12:23:59 PST)
- [AMBER] reporting ΔG? or ΔΔG? vs experimental ΔG using FEP+ and TI King Wang via AMBER (Mon Jan 13 2025 - 15:52:54 PST)
- [AMBER] Quick Cuda Matt Goff via AMBER (Wed Jan 15 2025 - 16:16:02 PST)
- [AMBER] Error in make install TUSHAR GUPTA via AMBER (Wed Jan 15 2025 - 17:05:52 PST)
- [AMBER] Force field parameters modification Tej Tarun Sharma 2310225 via AMBER (Wed Jan 15 2025 - 23:17:56 PST)
- [AMBER] Problems installing Amber24 on M3 Mac Sommers, Rachel C. via AMBER (Thu Jan 16 2025 - 06:16:42 PST)
- [AMBER] Interactions of GAFF2 force field with Lipid21 and BSC1 force fields Victor Nazarychev via AMBER (Fri Jan 17 2025 - 02:53:35 PST)
- [AMBER] MMPBSA Error (Topology I think) Vishwaa Kannan via AMBER (Sat Jan 18 2025 - 13:33:58 PST)
- [AMBER] GBNeck parameters modification to incorporate CustomGBForce calculations of OpenMM in Amber Tej Tarun Sharma 2310225 via AMBER (Tue Jan 21 2025 - 04:16:39 PST)
- [AMBER] Compiling on AMD MI50 chips Wong, Sergio E. via AMBER (Tue Jan 21 2025 - 13:57:07 PST)
- [AMBER] single point energy calculation Benjamin Shugaev via AMBER (Thu Jan 23 2025 - 15:11:43 PST)
- [AMBER] Convert Gromacs RB dihedrals to AMBER dihedrals Abdelrahman, Noureen via AMBER (Sat Jan 25 2025 - 00:24:46 PST)
- [AMBER] Error in make install INDAH LANGITASARI via AMBER (Sun Jan 26 2025 - 00:14:37 PST)
- [AMBER] protonated imidazole but post antechamber two N+ in ring.... Debarati DasGupta via AMBER (Sun Jan 26 2025 - 08:21:36 PST)
- [AMBER] MCPB.py RESP Value Issues Dratch, Benjamin via AMBER (Sun Jan 26 2025 - 08:52:54 PST)
- [AMBER] Simulating LES with noe restraints Кунина, Елизавета Игоревна via AMBER (Thu Jan 30 2025 - 23:58:57 PST)
- Last message date: Fri Jan 31 2025 - 00:30:02 PST
- Archived on: Mon Feb 03 2025 - 05:56:16 PST
