TI simulation &cntrl imin = 0, nstlim = 3000000, irest = 1, ntx = 5, dt = 0.002, ntt = 3, temp0 = 300.0, gamma_ln = 2.0, tautp = 1.0, ig = -1, ntc = 2, ntf = 1, ntb = 2, ntp = 1, pres0 = 1.0, taup = 2.0, ioutfm = 1, iwrap = 1, cut = 10, ntwe = 10000, ntwx = 10000, ntpr = 10000, ntwr = 20000, icfe = 1, clambda = 0.95, scalpha = 0.5, scbeta = 1.0, logdvdl = 1, ifmbar = 1, mbar_states = 21, mbar_lambda = 0.00, 0.05, 0.10, 0.15, 0.20, 0.25, 0.30, 0.35, 0.40, 0.45, 0.50, 0.55, 0.60, 0.65, 0.70, 0.75, 0.80, 0.85, 0.90, 0.95, 1.00, timask1 = ':1', timask2 = ':2', ifsc=1, scmask1=':1@C19,C20,C21,C22,C23,C24,C25,O3,N6,H15,H16,H17,H18,H19,H20', scmask2=':2@H15', crgmask='' gti_cut = 1 ! internal softcore non-bonded terms will not be cut, 'cut' has no effect gti_output = 1 ! = 1, output detailed TI results gti_add_sc = 25 ! = 25, energy terms to be scaled by lambda gti_scale_beta = 1 ! = 1, use the softcore potential form 25.13 in Amber Manual 2023 gti_cut_sc_on = 8 ! distance to smooth softcore potential begin at, in unit of Ang gti_cut_sc_off = 10 ! distance to smooth softcore potential stop at, in unit of Ang gti_lam_sch = 1 ! = 1, lambda replaced by smoothstep lambda gti_ele_sc = 1 ! = 1, softcore smoothstep electrostatic potential gti_vdw_sc = 1 ! = 1, softcore smoothstep vdW potential gti_cut_sc = 2 ! = 2, smooth both electrostatic and vdW gti_ele_exp = 2 ! = 2, best practice gti_vdw_exp = 2 ! = 2, best practice gremd_acyc = 1 ! = 1, not exchange lambda = 0 with lambda = 1 directly / &ewald /