Have you tried using cpptraj?
https://amberhub.chpc.utah.edu/autoimage/
On Fri, Nov 22, 2024, 11:50 PM Kankana Bhattacharjee via AMBER <
amber.ambermd.org> wrote:
> Dear AMBER users,
>
> I'm working on applying PBC correction to a trimeric protein complex from a
> CG MD simulation. It is found that, one monomeric unit of the complex is
> positioned in its periodic image. I would appreciate any suggestions on how
> to proceed.
> Thanks & Regards
> Kankana Bhattacharjee
> Ph.D. Scholar
> Department of Chemistry
> Ashoka University
> Sonipat, Haryana
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Received on Sat Nov 23 2024 - 06:30:01 PST
